Merge branch 'develop' of https://dci-gitlab.cines.fr/dci/abs into develop

RAMSES/machines/occigen-bdw/batch_large.slurm

+#!/bin/bash
+#SBATCH --job-name=RamsesLarge
+#SBATCH --nodes=147
+#SBATCH --ntasks=12800
+#SBATCH --cpus-per-task=2
+#SBATCH --threads-per-core=1
+#SBATCH --time=00:30:00
+#SBATCH --output=ramses3dLarge-BDW28-%j.out
+#SBATCH --error=ramses3dLarge-BDW28-%j.err
+#SBATCH --constraint=BDW28
+set -x
+
+#!/bin/bash
+#MSUB -r PROD_BIG
+#MSUB -n 12800
+#MSUB -c 2
+#MSUB -T 1800
+#MSUB -o PROD_BIG.o_%J
+#MSUB -e PROD_BIG.e_%J
+#MSUB -A gch0412
+#MSUB -q rome
+
+
+
+source ./env
+SIMU=$bench_dir/PROD_BIG/		# Working directory
+NML="cosmo.nml"				# Namelist file
+RAMSES=$ramses_dir/ramses/bin/ramses3d  # ramses executable
+DATE=`date +"%m-%d-%y-%H-%M-%S"`
+cd $SIMU
+srun --mpi=pmi2 -K1 --resv-ports -n $SLURM_NTASKS $RAMSES $NML > $SIMU'/run_'$DATE.log

RAMSES/machines/occigen-bdw/batch_medium.slurm

+#!/bin/bash
+#SBATCH --job-name=RamsesMedium
+#SBATCH --nodes=147
+#SBATCH --ntasks=4096
+#SBATCH --threads-per-core=1
+#SBATCH --time=00:30:00
+#SBATCH --output=ramses3dMedium-BDW28-%j.out
+#SBATCH --constraint=BDW28
+set -x
+
+source ./env
+cp ../../PROD/cosmo.nml $bench_dir/testcase_medium/.
+SIMU=$bench_dir/testcase_medium/	# Working directory
+NML="cosmo.nml"				# Namelist file
+RAMSES=$ramses_dir/ramses/bin/ramses3d  # ramses executable
+DATE=`date +"%m-%d-%y-%H-%M-%S"`
+cd $SIMU
+srun --mpi=pmi2 -K1 --resv-ports -n $SLURM_NTASKS $RAMSES $NML > $SIMU'/run_'$DATE.log

RAMSES/machines/occigen-bdw/batch_small.slurm

 #!/bin/bash
 #SBATCH --job-name=DEBUG
-#SBATCH --nodes=11
+#SBATCH --nodes=10
 #SBATCH --ntasks=256
 #SBATCH --threads-per-core=1
 #SBATCH --time=00:30:00
-#SBATCH --output=ramses3d-BDW28-%j.out
-#SBATCH --error=ramses3d-BDW28-%j.err
+#SBATCH --output=ramses3dDebug-BDW28-10N-%j.out
 #SBATCH --constraint=BDW28
 set -x
 

RAMSES/testcase_medium/README.md

+Test case presentation
+======================
+
+The small test case of the template application is doing nothing but watching videos on Youtube all day long.
+It uses no DFT method, nor spectral method or anything else. The FFTW is widely not use for this case.
+
+
+Case profile
+------------
+
+A profiling of a small specfem3D test case performed on Occigen on 1 haswell node (64GB) is available in this folder:
+`profile_occigen-hsw.html"
+
+It has been generated using Intel APS (infos: https://software.intel.com/sites/products/snapshots/application-snapshot/) 

RAMSES/testcase_medium/prepare.sh

+#!/bin/bash
+source ../machines/occigen-bdw/env
+echo "************************************************************"
+echo "* Prepare medium case in $bench_dir"
+echo "************************************************************"
+mkdir -p $bench_dir/testcase_medium/
+if [[ $HOSTNAME = *"occigen"* ]]; then
+	tar xvf /store/CINES/dci/SHARED/abs/ramses/input.tar -C $bench_dir/testcase_medium/.
+elif [[ $HOSTNAME = *"jean-zay"* ]]; then
+	tar xvf $SCRATCH/abs/ramses/input.tar -C $bench_dir/testcase_medium/.
+elif [[ $HOSTNAME = *"irene"* ]]; then
+	 tar xvf  $CCCSCRATCHDIR/abs/ramses/input.tar -C $bench_dir/testcase_medium/.
+else
+	echo "Hostname not recognized: abort"
+	exit 1
+fi
+echo "************************************************************"
+echo "* End Prepare medium case "
+echo "************************************************************"

RAMSES/testcase_medium/run.sh

+#!/bin/bash
+cd ../machines/occigen-bdw
+source ./env
+if [ -z "$bench_dir" ]; then
+echo "bench_dir missing"
+exit 1
+fi
+
+sbatch batch_medium.slurm 

RAMSES/testcase_medium/validate.sh

+#!/bin/bash
+source ../machines/occigen-bdw/env 
+cd $bench_dir/PROD/
+
+log_file=`ls -thlx run_* | awk -F " " '{ print $1 }'`
+start_t=`grep startup $log_file | awk '{ print $5 }'`
+end_t=`grep "Total elapsed time:"  $log_file | awk '{ print $4 }'`
+perf=`bc -l <<< $end_t-$start_t`
+
+if [ -z "$perf" ] || [ -z "$end_t" ]
+then
+    echo "bench is not validated"
+else
+    echo "bench is validated"
+    echo "end = $end_t s"
+    echo "perf = $perf s (total simulation time excluding initialization and i/o)"
+fi
+