Remove the arch option into run.sh + modify the prepare.sh to copy paste the...

Remove the arch option into run.sh + modify the prepare.sh to copy paste the env bench into the test case + add the copy of the solutions for the test case into results directory for YALES2BIO smalltest

YALES2BIO/testcase_small/prepare.sh

@@ -42,6 +42,7 @@ elif [ "$YALES2_HOSTTYPE" == 'jeanzay' ]; then
    machine='jean-zay-cpu'
 fi
 rm *.batch
+cp ../machines/$machine/env_bench ./
 cp ../machines/$machine/${YALES2_HOSTTYPE}_testcase_small.batch ./
 
 ####################################

YALES2BIO/testcase_small/run.sh

 
-####################################
-# Source the right environment
-####################################
-if [ -z "$1" ]
-  then
-    echo "Please provide the targeted machine from:"
-    ls machines/
-    echo ""
-    echo "Example: ./run.sh occigen-bdw"
-    exit 1
-fi
-env_file="../machines/$1/env_bench"
-
-if [ ! -f $env_file ]
-        then
-    echo "ERROR: $env_file not found!"
-                exit 1
-        else
-                source $env_file
-fi
-
 ###########################################
 # LAUNCH THE TEST CASE
 ###########################################
+source env_bench
 if [ $YALES2_HOSTTYPE == 'occigen' ]; then
    sbatch ${YALES2_HOSTTYPE}_testcase_small.batch
 elif [ $YALES2_HOSTTYPE == 'jeanzay' ]; then

YALES2BIO/testcase_small/validate.sh

@@ -4,6 +4,9 @@
 if grep -q "Test passed successfully." yales2bio_testcase_small.log; then 
    echo "TEST HAS PASSED: SUCCESSFUL"
    python validate.py
+   mkdir results
+   cp yales2bio_testcase_small.* ./results
+   mv dump ./results
 else
    echo "TEST HAS NOT PASSED: FAIL" 
 fi