modified exemple as defined during today's team meeting

application-exemple/README.md

@@ -44,12 +44,13 @@ For instance:
 
 Compile the code using:
 ```
-source machines/occigen-bdw/env
-./compile.sh
+./compile.sh occigen-bdw
 ```
 
 `machines/occigen-bdw/env` contains the information for compilation (module load gcc openmpi lapack hdf5 ...)
 
+You can create your own machine directory under `machines` to define the appropriate environment.
+
 Run and validate the simulation:
 --------------------------------
 
@@ -62,7 +63,7 @@ For each test case, given in a separate folder (e.g. testcase_small), you can fi
 For running and validating the simulation, one should be able to do:
 ```
 cd testcase_XXX
-./prepare.sh
+./prepare.sh occigen-bdw
 ./run.sh
 ./validate.sh
 ```

application-exemple/compile.sh

+#!/bin/bash
+
+if [ -z "$1" ]
+  then
+    echo "Please provide the targeted machine from:"
+    ls machines/
+    echo ""
+    echo "Example: ./compile.sh occigen-bdw"
+    exit 1
+fi
+env_file="machines/$1/env_bench"
+
+if [ ! -f $env_file ] 
+	then
+    echo "ERROR: $env_file not found!"
+		exit 1
+	else
+		source $env_file	
+fi
+
+#Here give compilation info

application-exemple/testcase_small/prepare.sh

+#!/bin/bash
+
+if [ -z "$1" ]
+  then
+    echo "Please provide the targeted machine from:"
+    ls ../machines/
+    echo ""
+    echo "Example: ./prepare.sh occigen-bdw"
+    exit 1
+fi
+machine_dir="../machines/$1"
+
+cp $machine_dir/env_bench .
+cp $machine_dir/batch_small.slurm .