added debug small and large for smilei on JZ

Smilei/machines/jean-zay-cpu/.gitignore

+*output
+*.out

Smilei/machines/jean-zay-cpu/batch_debug.slurm

+#!/bin/bash
+#SBATCH --nodes=1
+#SBATCH --ntasks-per-node=2
+#SBATCH --hint=nomultithread
+#SBATCH --cpus-per-task=20
+#SBATCH -J tst_accelec
+#SBATCH -A qbg@cpu
+#SBATCH --time=00:30:00
+#SBATCH --output=debug_test.out
+
+## Set the working dir to the dir in which the submission was called.
+
+source env_bench
+
+export OMP_NUM_THREADS=$SLURM_CPUS_PER_TASK
+export OMP_PLACES=core
+export KMP_AFFINITY=verbose
+
+mkdir -p debug_output
+cd debug_output
+
+#srun --mpi=pmi2 -K1 -m block:block -c $SLURM_CPUS_PER_TASK --resv-ports -n $SLURM_NTASKS $EXE $SMILEI_DIR/testcase_debug/test.py
+srun -m block:block -c $SLURM_CPUS_PER_TASK -n $SLURM_NTASKS $EXE $SMILEI_DIR/testcase_debug/test.py

Smilei/machines/jean-zay-cpu/batch_large.slurm

+#!/bin/bash
+#SBATCH --nodes=200
+#SBATCH --ntasks-per-node=2
+#SBATCH --hint=nomultithread
+#SBATCH --cpus-per-task=20
+#SBATCH -J tst_accelec
+#SBATCH -A qbg@cpu
+#SBATCH --time=02:00:00
+#SBATCH --output=large_test.out
+
+## Set the working dir to the dir in which the submission was called.
+
+source env_bench
+
+export OMP_NUM_THREADS=$SLURM_CPUS_PER_TASK
+export OMP_PLACES=core
+
+mkdir -p large_output
+cd large_output
+
+srun --mpi=pmi2 -K1 -m block:block -c $SLURM_CPUS_PER_TASK --resv-ports -n $SLURM_NTASKS $EXE $SMILEI_DIR/testcase_large/test.py

Smilei/machines/jean-zay-cpu/batch_small.slurm

+#!/bin/bash
+#SBATCH --nodes=50
+#SBATCH --ntasks-per-node=2
+#SBATCH --hint=nomultithread
+#SBATCH --cpus-per-task=20
+#SBATCH -J tst_accelec
+#SBATCH -A qbg@cpu
+#SBATCH --time=01:30:00
+#SBATCH --output=small_test.out
+
+## Set the working dir to the dir in which the submission was called.
+
+source env_bench
+
+export OMP_NUM_THREADS=$SLURM_CPUS_PER_TASK
+export OMP_PLACES=core
+
+mkdir -p small_output
+cd small_output
+
+srun --mpi=pmi2 -K1 -m block:block -c $SLURM_CPUS_PER_TASK --resv-ports -n $SLURM_NTASKS $EXE $SMILEI_DIR/testcase_small/test.py

Smilei/machines/jean-zay-cpu/env_bench

+# Load the correct modules:
+#
+module purge
+module load anaconda-py2/2019.03
+module load git
+export PYTHONHOME=/gpfslocalsup/pub/anaconda-py2/2019.03
+export LD_LIBRARY_PATH=$PYTHONHOME/lib:$LD_LIBRARY_PATH
+
+module load intel-compilers/19.0.4
+module load intel-mpi/19.0.4
+module load hdf5/1.10.5-mpi
+export SMILEICXX=mpiicpc
+export HDF5_ROOT_DIR=/gpfslocalsup/spack_soft/hdf5/1.10.5/intel-19.0.4-lnysdcbocfokaq4yxc72wiplpfknw7e6
+
+export CXXFLAGS+=" -xCOMMON-AVX512 -ip -inline-factor=1000 -D__INTEL_CASCADELAKE_6248 -qopt-zmm-usage=high -fno-alias -ipo"
+
+GIT_ROOT=`git rev-parse --show-toplevel`
+SMILEI_DIR=$GIT_ROOT/Smilei/
+EXE=$SMILEI_DIR/Smilei/smilei

Smilei/testcase_large/test.py

@@ -29,7 +29,7 @@ cells_per_patch = [8,8,8]
 patches_per_node = [8,8,8]
 
 # Number of nodes
-nodes = [16,16,16]
+nodes = [16,16,8]
 
 # Number of patches
 patches = [nodes[i]*patches_per_node[i] for i in range(3)]